PDB数据库中的一系列工具
这些工具是今天在pdb中发现的，这里是链接：
http://sw-tools.pdb.org/
当然，为了看着方便，我还是再引用一下吧：
Data Extraction and Deposition Preparation Tools
- pdb_extract (for workstation) -- Tools and examples for extracting mmCIF data from structure determination applications
- ADIT (for workstation) -- A web-based package for preparing, editing and checking structure data entries
Data Format Conversion Tools
- CIFTr -- A tool for translating mmCIF data files into PDB format
- MAXIT -- An application for processing and annotating of macromolecular structure data
- CIF2VARIOUS -- A tool for converting mmCIF structure factor data to other crystallographic formats.
- MMCIF Dictionary Suite -- Collection of tools to parse, validate, manage data dictionaries used by the PDB. Applications are also included, which convert data dictionaries to XML schema, provide HTML browsing, produce mapping information for relational database loaders (Db Loader) and convert data files between related CIF dialects
- PDBML2CIF -- A tool for converting PDBML data files into mmCIF data files
Data Validation Tools
Data Parsing Tools
- CIFPARSE -- A C Library of Access Tools for mmCIF in C
- CIFPARSE-OBJ -- A Class Library of Access Tools for mmCIF in C++
- STAR (CIF) Parser -- Several object-oriented Perl modules to parse mmCIF data files
Dictionary and Data Management Tools
- Db Loader -- An application to load mmCIF data into relational databases and XML (formerly known as mmcif-loader)
- CIFOBJ -- A Class Library of mmCIF Dictionary Access Tools
- CIFTABLE (ISTable) -- A Class Library of Table Access Tools for mmCIF data
- CIFTABLE (SSTable) -- A Class Library of Table Access Tools for mmCIF data (old version)
Tools supporting the OMG Corba Standard for Macromolecular Structure Data
- OpenMMS Toolkit -- A suite of Java source code that includes an mmCIF parser, RDBMS loader, XML translator, and Corba server
Other Software Tools
- mmLIB -- a Python macromolecular toolkit (including support for mmCIF)
- BioPython -- Python toolkit for computational biology (including support for mmCIF)
- XML2PDB -- an open-source C++ program for converting XML to PDB format
- OOSTAR -- Applications to Manipulate STAR Files (Objective-C)
- OpenRasMol -- Open source versions of RasMol (with CIF support)
- CBFLib -- A library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files
- cif2pdb -- Program to Convert mmCIF to pseudo-PDB Format
- CIFtbx2 -- Extended CIF Tool Box (Fortran) with CYCLOPS and cif2cif
- pdb2cif -- Scripts to Filter a PDB Entry and Produce mmCIF
- CIFLIB -- C Language Application Program Interface (no longer supported)
另外，又搞清楚了原来mmCIF是
iucr（International Union of Crystallography）的大分子结构格式。
The macromolecular CIF dictionary (mmCIF) is a set of data names designed to describe the macromolecular crystallographic experiment and its results.
